Check CoCoA input

Check CoCoA input

check.cocoa.input(
  mtx.data,
  celltype,
  cell2indv,
  indv2exp = NULL,
  celltype.mat = NULL
)

Arguments

mtx.data

fileset.header ($mtx, $row, $col, $idx)

celltype

celltype/cluster assignments (cells x 2 mapping, cells x 1, or just a single string)

cell2indv

cell-level individual assignments (cells x 2), cell -> indv

indv2exp

individual treatment/exposure assignments (indiv x 2), indv -> exposure

celltype.mat

celltype/cluster assignment matrix (cells x cell types)